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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

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Protein Name: Nuclear factor NF-kappa-B p105 subunit

UniprotKB/SwissProt ID: NFKB1_HUMAN (P19838)

Gene Name: NFKB1

Organism: Homo sapiens (Human).

Function: NF-kappa-B is a pleiotropic transcription factor present in almost all cell types and is the endpoint of a series of signal transduction events that are initiated by a vast array of stimuli related to many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have distinct preferences for different kappa-B sites that they can bind with distinguishable affinity and specificity. Different dimer combinations act as transcriptional activators or repressors, respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification and subcellular compartmentalization as well as by interactions with other cofactors or corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway, I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators, subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators. The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational processing. The proteasome-mediated process ensures the production of both p50 and p105 and preserves their independent function, although processing of NFKB1/p105 also appears to occur post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the enhancer region of genes involved in immune response and acute phase reactions. In a complex with MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by proteasome-dependent degradation of NFKB1/p105.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus. Cytoplasm. Note=Nuclear, but also found in the cytoplasm in an inactive form complexed to an inhibitor (I-kappa-B).

PDB :
( If your security settings prevent Jmol from running, please register http://140.138.144.145/ as a safe location in your Java settings. )

Network with metabolic pathway:
Kegg map ID Pathway Link
map05030Cocaine addiction
map05120Epithelial cell signaling in Helicobacter pylori infection
map05131Shigellosis
map05134Legionellosis
map05221Acute myeloid leukemia
map04064NF-kappa B signaling pathway
map04066HIF-1 signaling pathway
map04210Apoptosis
map04380Osteoclast differentiation
map04621NOD-like receptor signaling pathway
map04622RIG-I-like receptor signaling pathway
map04623Cytosolic DNA-sensing pathway
map04660T cell receptor signaling pathway
map04662B cell receptor signaling pathway
map04722Neurotrophin signaling pathway
map04920Adipocytokine signaling pathway
map05133Pertussis
map05140Leishmaniasis
map05142Chagas disease (American trypanosomiasis)
map05145Toxoplasmosis
map05146Amoebiasis
map05160Hepatitis C
map05162Measles
map05212Pancreatic cancer
map05215Prostate cancer
map05220Chronic myeloid leukemia
map05222Small cell lung cancer
map04010MAPK signaling pathway
map04062Chemokine signaling pathway
map04151PI3K-Akt signaling pathway
map04620Toll-like receptor signaling pathway
map05132Salmonella infection
map05152Tuberculosis
map05161Hepatitis B
map05164Influenza A
map05166HTLV-I infection
map05168Herpes simplex infection
map05169Epstein-Barr virus infection
map05200Pathways in cancer
map05202Transcriptional misregulation in cancer
map05203Viral carcinogenesis
Graphical Visualization of S-nitrosylation Sites:
Overview of Protein S-nitrosylation Sites with Functional and Structural Information
InterPro ID Domain
IPR000451
IPR000488
IPR002110
IPR002909
IPR008967
IPR011029
IPR011539
IPR013783
IPR014756

3D Structure Databases:
3D structure databases
EntryMethodResolution (A)ChainPositionsView
1MDI NMR - B55-67Link
1MDJ NMR - B55-67Link
1MDK NMR - B55-67Link
1NFI X-ray 2.70 A B/D248-354Link
1SVC X-ray 2.60 A P2-365Link
2DBF NMR - A806-893Link
2O61 X-ray 2.80 A B40-352Link
3GUT X-ray 3.59 A B/D/F/H41-352Link

The S-nitrosylation sites of NFKB1_HUMAN

No. Position S-nitrosylated Peptide Secondary Structure of S-nitrosylated Peptide Solvent Accessibility of nitrosylated Site Substrate Motifs PubMed ID Experiment
161KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC0422178444-
261KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC041508666
(Cys62)
-
361KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC0423796488
(Cys62)
-
461KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC048710491
(Cys62)
in vitro
561KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC0415688001-
661KQRGFRFRYV C EGPSHGGLPG CCCCCEEEEE E CCCCCCCCCC 3.57%HC0416099468-