dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 1DNQ
Chain: A
Site: 305


	PTM	Style	Surface	Display
SNO: A_305
Flank: A_299~311
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	299	V	>10	C	18	-
	300	R	>10	C	115	-
	301	K	>10	C	140	-
	302	C	8.403	E	28
	303	K	6.756	E	125
	304	K	5.004	E	161	-
Center	305	m	-	C	13	-
+6	306	E	6.24	C	191	-
	307	G	7.075	C	49	-
	308	P	6.079	C	124	-
	309	C	3.445	C	34
	310	R	6.165	C	248	-
	311	K	8.927	C	190	-
Other site of 8	292	Y	4.151	E	125	-
	291	S	4.304	E	25	-
	290	D	4.77	C	106	-
	289	A	7.429	C	94	-
	293	E	7.704	E	45	-
	288	G	8.945	C	41	-
	294	M	9.047	C	117	-
	287	C	9.388	C	25

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.445	309	C	C	34
4.151	292	Y	E	125
4.304	291	S	E	25

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	229	-100		Phosphoserine
Modified residue	678	349	Outside Of PDB File	Phosphothreonine; by PKC and PKD/PRKD1
Modified residue	693	364	Outside Of PDB File	Phosphothreonine; by PKD/PRKD1
Modified residue	695	366	Outside Of PDB File	Phosphoserine
Modified residue	991	662	Outside Of PDB File	Phosphoserine
Modified residue	995	666	Outside Of PDB File	Phosphoserine
Modified residue	998	669	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1016	687	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1026	697	Outside Of PDB File	Phosphoserine
Modified residue	1039	710	Outside Of PDB File	Phosphoserine
Modified residue	1041	712	Outside Of PDB File	Phosphothreonine
Modified residue	1042	713	Outside Of PDB File	Phosphoserine
Modified residue	1064	735	Outside Of PDB File	Phosphoserine
Modified residue	1070	741	Outside Of PDB File	Phosphoserine
Modified residue	1071	742	Outside Of PDB File	Phosphoserine
Modified residue	1081	752	Outside Of PDB File	Phosphoserine
Modified residue	1092	763	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1110	781	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1166	837	Outside Of PDB File	Phosphoserine
Modified residue	1172	843	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1197	868	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1199	870	Outside Of PDB File	Omega-N-methylated arginine
Glycosylation	56	-273		N-linked (GlcNAc...) (complex); partial; atypical
Glycosylation	73	-256		N-linked (GlcNAc...); atypical
Glycosylation	128	-201		N-linked (GlcNAc...)
Glycosylation	175	-154		N-linked (GlcNAc...)
Glycosylation	196	-133		N-linked (GlcNAc...)
Glycosylation	352	23		N-linked (GlcNAc...)
Glycosylation	361	32	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	413	84	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	444	115	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	528	199	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	568	239	Outside Of PDB File	N-linked (GlcNAc...); partial
Glycosylation	603	274	Outside Of PDB File	N-linked (GlcNAc...); partial
Disulfide bond	31<-->58	-298<-->-271	<-->
Disulfide bond	157<-->187	-172<-->-142	<-->
Disulfide bond	190<-->199	-139<-->-130	<-->
Disulfide bond	194<-->207	-135<-->-122	<-->
Disulfide bond	215<-->223	-114<-->-106	<-->
Disulfide bond	219<-->231	-110<-->-98	<-->
Disulfide bond	232<-->240	-97<-->-89	<-->
Disulfide bond	236<-->248	-93<-->-81	<-->
Disulfide bond	251<-->260	-78<-->-69	<-->
Disulfide bond	264<-->291	-65<-->-38	<-->
Disulfide bond	295<-->307	-34<-->-22	<-->
Disulfide bond	311<-->326	-18<-->-3	<-->
Disulfide bond	329<-->333	0<-->4	<-->
Disulfide bond	337<-->362	8<-->33	Outside Of PDB File
Disulfide bond	470<-->499	141<-->170	Outside Of PDB File
Disulfide bond	506<-->515	177<-->186	Outside Of PDB File
Disulfide bond	510<-->523	181<-->194	Outside Of PDB File
Disulfide bond	526<-->535	197<-->206	Outside Of PDB File
Disulfide bond	539<-->555	210<-->226	Outside Of PDB File
Disulfide bond	558<-->571	229<-->242	Outside Of PDB File
Disulfide bond	562<-->579	233<-->250	Outside Of PDB File
Disulfide bond	582<-->591	253<-->262	Outside Of PDB File
Disulfide bond	595<-->617	266<-->288	Outside Of PDB File
Disulfide bond	620<-->628	291<-->299	Outside Of PDB File
Disulfide bond	624<-->636	295<-->307	Outside Of PDB File
Cross-link	716	387	Outside Of PDB File
Cross-link	737	408	Outside Of PDB File
Cross-link	754	425	Outside Of PDB File
Cross-link	867	538	Outside Of PDB File
Cross-link	929	600	Outside Of PDB File
Cross-link	970	641	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	745	416	Outside Of PDB File	ATP
Binding site	855	526	Outside Of PDB File	ATP

Menu:

Latest news: