dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 1IVO
Chain: A
Site: 287


	PTM	Style	Surface	Display
SNO: A_287
Flank: A_281~293
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	281	G	>10	C	3	-
	282	S	>10	E	0	-
	283	C	9.715	E	0	-
	284	V	7.832	E	2
	285	R	8.041	C	77	-
	286	A	5.429	C	22	-
Center	287	l	-	C	27	-
+6	288	G	6.02	C	42	-
	289	A	8.871	C	70	-
	290	D	9.057	C	68	-
	291	S	6.218	E	15
	292	Y	5.78	C	165	-
	293	E	4.863	C	30
Other site of 12	302	C	4.315	C	34
	301	K	5.401	C	61	-
	276	V	5.731	E	0
	278	T	6.752	C	34	-
	303	K	7.015	C	101	-
	277	V	7.249	E	16	-
	300	R	7.471	C	41	-
	294	M	8.027	C	106	-
	304	K	8.368	E	116	-
	295	E	8.846	C	87	-
	275	Y	9.141	C	16	-
	279	D	9.6	C	123

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
4.315	302	C	C	34
4.863	293	E	C	30
5.401	301	K	C	61

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	229	-82		Phosphoserine
Modified residue	678	367	Outside Of PDB File	Phosphothreonine; by PKC and PKD/PRKD1
Modified residue	693	382	Outside Of PDB File	Phosphothreonine; by PKD/PRKD1
Modified residue	695	384	Outside Of PDB File	Phosphoserine
Modified residue	991	680	Outside Of PDB File	Phosphoserine
Modified residue	995	684	Outside Of PDB File	Phosphoserine
Modified residue	998	687	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1016	705	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1026	715	Outside Of PDB File	Phosphoserine
Modified residue	1039	728	Outside Of PDB File	Phosphoserine
Modified residue	1041	730	Outside Of PDB File	Phosphothreonine
Modified residue	1042	731	Outside Of PDB File	Phosphoserine
Modified residue	1064	753	Outside Of PDB File	Phosphoserine
Modified residue	1070	759	Outside Of PDB File	Phosphoserine
Modified residue	1071	760	Outside Of PDB File	Phosphoserine
Modified residue	1081	770	Outside Of PDB File	Phosphoserine
Modified residue	1092	781	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1110	799	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1166	855	Outside Of PDB File	Phosphoserine
Modified residue	1172	861	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1197	886	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1199	888	Outside Of PDB File	Omega-N-methylated arginine
Glycosylation	56	-255		N-linked (GlcNAc...) (complex); partial; atypical
Glycosylation	73	-238		N-linked (GlcNAc...); atypical
Glycosylation	128	-183		N-linked (GlcNAc...)
Glycosylation	175	-136		N-linked (GlcNAc...)
Glycosylation	196	-115		N-linked (GlcNAc...)
Glycosylation	352	41		N-linked (GlcNAc...)
Glycosylation	361	50		N-linked (GlcNAc...)
Glycosylation	413	102		N-linked (GlcNAc...)
Glycosylation	444	133		N-linked (GlcNAc...)
Glycosylation	528	217		N-linked (GlcNAc...)
Glycosylation	568	257		N-linked (GlcNAc...); partial
Glycosylation	603	292		N-linked (GlcNAc...); partial
Disulfide bond	31<-->58	-280<-->-253	<-->
Disulfide bond	157<-->187	-154<-->-124	<-->
Disulfide bond	190<-->199	-121<-->-112	<-->
Disulfide bond	194<-->207	-117<-->-104	<-->
Disulfide bond	215<-->223	-96<-->-88	<-->
Disulfide bond	219<-->231	-92<-->-80	<-->
Disulfide bond	232<-->240	-79<-->-71	<-->
Disulfide bond	236<-->248	-75<-->-63	<-->
Disulfide bond	251<-->260	-60<-->-51	<-->
Disulfide bond	264<-->291	-47<-->-20	<-->
Disulfide bond	295<-->307	-16<-->-4	<-->
Disulfide bond	311<-->326	0<-->15	<-->
Disulfide bond	329<-->333	18<-->22	<-->
Disulfide bond	337<-->362	26<-->51	<-->
Disulfide bond	470<-->499	159<-->188	<-->
Disulfide bond	506<-->515	195<-->204	<-->
Disulfide bond	510<-->523	199<-->212	<-->
Disulfide bond	526<-->535	215<-->224	<-->
Disulfide bond	539<-->555	228<-->244	<-->
Disulfide bond	558<-->571	247<-->260	<-->
Disulfide bond	562<-->579	251<-->268	<-->
Disulfide bond	582<-->591	271<-->280	<-->
Disulfide bond	595<-->617	284<-->306	<-->
Disulfide bond	620<-->628	309<-->317	<-->
Disulfide bond	624<-->636	313<-->325	<-->
Cross-link	716	405	Outside Of PDB File
Cross-link	737	426	Outside Of PDB File
Cross-link	754	443	Outside Of PDB File
Cross-link	867	556	Outside Of PDB File
Cross-link	929	618	Outside Of PDB File
Cross-link	970	659	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	745	434	Outside Of PDB File	ATP
Binding site	855	544	Outside Of PDB File	ATP

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