dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 1YY9
Chain: A
Site: 166


	PTM	Style	Surface	Display
SNO: A_166
Flank: A_160~172
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	160	L	>10	C	70	-
	161	G	>10	C	38	-
	162	S	>10	C	112	-
	163	C	9.636	C	47	-
	164	Q	7.993	C	121	-
	165	K	5.17	C	179	-
Center	166	c	-	C	33	-
+6	167	D	6.152	C	56	-
	168	P	8.098	C	128	-
	169	S	9.33	C	87	-
	170	C	6.817	C	10
	171	P	8.845	H	36	-
	172	N	8.543	H	145	-
Other site of 17	175	C	3.824	E	0
	174	S	4.494	C	9	-
	173	G	4.968	H	43	-
	134	N	5.392	C	24
	137	S	6.086	H	38
	177	G	6.161	C	2	-
	176	W	6.322	C	4	-
	183	C	6.765	E	15
	178	A	7.029	C	25	-
	135	V	7.75	H	0	-
	138	I	7.778	C	9	-
	182	N	7.938	H	3	-
	179	G	8.469	C	32	-
	184	Q	8.481	C	10	-
	136	E	8.648	H	123	-
	133	C	8.844	C	12	-
	180	E	9.153	H	55	-

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.824	175	C	E	0
4.494	174	S	C	9
4.968	173	G	H	43	-

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	229	39		Phosphoserine
Modified residue	678	488	Outside Of PDB File	Phosphothreonine; by PKC and PKD/PRKD1
Modified residue	693	503	Outside Of PDB File	Phosphothreonine; by PKD/PRKD1
Modified residue	695	505	Outside Of PDB File	Phosphoserine
Modified residue	991	801	Outside Of PDB File	Phosphoserine
Modified residue	995	805	Outside Of PDB File	Phosphoserine
Modified residue	998	808	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1016	826	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1026	836	Outside Of PDB File	Phosphoserine
Modified residue	1039	849	Outside Of PDB File	Phosphoserine
Modified residue	1041	851	Outside Of PDB File	Phosphothreonine
Modified residue	1042	852	Outside Of PDB File	Phosphoserine
Modified residue	1064	874	Outside Of PDB File	Phosphoserine
Modified residue	1070	880	Outside Of PDB File	Phosphoserine
Modified residue	1071	881	Outside Of PDB File	Phosphoserine
Modified residue	1081	891	Outside Of PDB File	Phosphoserine
Modified residue	1092	902	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1110	920	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1166	976	Outside Of PDB File	Phosphoserine
Modified residue	1172	982	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1197	1007	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1199	1009	Outside Of PDB File	Omega-N-methylated arginine
Glycosylation	56	-134		N-linked (GlcNAc...) (complex); partial; atypical
Glycosylation	73	-117		N-linked (GlcNAc...); atypical
Glycosylation	128	-62		N-linked (GlcNAc...)
Glycosylation	175	-15		N-linked (GlcNAc...)
Glycosylation	196	6		N-linked (GlcNAc...)
Glycosylation	352	162		N-linked (GlcNAc...)
Glycosylation	361	171		N-linked (GlcNAc...)
Glycosylation	413	223		N-linked (GlcNAc...)
Glycosylation	444	254		N-linked (GlcNAc...)
Glycosylation	528	338		N-linked (GlcNAc...)
Glycosylation	568	378		N-linked (GlcNAc...); partial
Glycosylation	603	413		N-linked (GlcNAc...); partial
Disulfide bond	31<-->58	-159<-->-132	<-->
Disulfide bond	157<-->187	-33<-->-3	<-->
Disulfide bond	190<-->199	0<-->9	<-->
Disulfide bond	194<-->207	4<-->17	<-->
Disulfide bond	215<-->223	25<-->33	<-->
Disulfide bond	219<-->231	29<-->41	<-->
Disulfide bond	232<-->240	42<-->50	<-->
Disulfide bond	236<-->248	46<-->58	<-->
Disulfide bond	251<-->260	61<-->70	<-->
Disulfide bond	264<-->291	74<-->101	<-->
Disulfide bond	295<-->307	105<-->117	<-->
Disulfide bond	311<-->326	121<-->136	<-->
Disulfide bond	329<-->333	139<-->143	<-->
Disulfide bond	337<-->362	147<-->172	<-->
Disulfide bond	470<-->499	280<-->309	<-->
Disulfide bond	506<-->515	316<-->325	<-->
Disulfide bond	510<-->523	320<-->333	<-->
Disulfide bond	526<-->535	336<-->345	<-->
Disulfide bond	539<-->555	349<-->365	<-->
Disulfide bond	558<-->571	368<-->381	<-->
Disulfide bond	562<-->579	372<-->389	<-->
Disulfide bond	582<-->591	392<-->401	<-->
Disulfide bond	595<-->617	405<-->427	<-->
Disulfide bond	620<-->628	430<-->438	<-->
Disulfide bond	624<-->636	434<-->446	<-->
Cross-link	716	526	Outside Of PDB File
Cross-link	737	547	Outside Of PDB File
Cross-link	754	564	Outside Of PDB File
Cross-link	867	677	Outside Of PDB File
Cross-link	929	739	Outside Of PDB File
Cross-link	970	780	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	745	555	Outside Of PDB File	ATP
Binding site	855	665	Outside Of PDB File	ATP

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