dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 1YY9
Chain: A
Site: 267


	PTM	Style	Surface	Display
SNO: A_267
Flank: A_261~273
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	261	Y	7.002	E	23	-
	262	S	5.72	E	32	-
	263	F	7.895	E	25	-
	264	G	9.114	C	49	-
	265	A	7.223	C	22	-
	266	T	4.898	E	25	-
Center	267	j	-	E	6	-
+6	268	V	6.286	E	38	-
	269	K	9.037	C	150	-
	270	K	>10	C	135	-
	271	k	>10	C	28	-
	272	P	>10	C	46	-
	273	R	>10	C	82	-
Other site of 16	240	C	3.184	C	10
	232	D	4.564	C	5
	230	F	4.964	E	57
	231	R	5.154	E	93	-
	239	T	5.63	C	68	-
	241	P	6.161	C	26
	260	K	6.49	C	31
	237	K	6.577	E	57
	236	C	7.916	E	8	-
	238	D	8.037	C	97	-
	233	E	8.215	C	130	-
	229	K	8.457	C	80	-
	235	T	8.61	C	48	-
	242	P	8.749	C	47	-
	259	G	8.982	C	10	-
	234	A	9.61	C	61	-

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.184	240	C	C	10
4.564	232	D	C	5
4.898	266	T	E	25

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	229	-62		Phosphoserine
Modified residue	678	387	Outside Of PDB File	Phosphothreonine; by PKC and PKD/PRKD1
Modified residue	693	402	Outside Of PDB File	Phosphothreonine; by PKD/PRKD1
Modified residue	695	404	Outside Of PDB File	Phosphoserine
Modified residue	991	700	Outside Of PDB File	Phosphoserine
Modified residue	995	704	Outside Of PDB File	Phosphoserine
Modified residue	998	707	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1016	725	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1026	735	Outside Of PDB File	Phosphoserine
Modified residue	1039	748	Outside Of PDB File	Phosphoserine
Modified residue	1041	750	Outside Of PDB File	Phosphothreonine
Modified residue	1042	751	Outside Of PDB File	Phosphoserine
Modified residue	1064	773	Outside Of PDB File	Phosphoserine
Modified residue	1070	779	Outside Of PDB File	Phosphoserine
Modified residue	1071	780	Outside Of PDB File	Phosphoserine
Modified residue	1081	790	Outside Of PDB File	Phosphoserine
Modified residue	1092	801	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1110	819	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1166	875	Outside Of PDB File	Phosphoserine
Modified residue	1172	881	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1197	906	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1199	908	Outside Of PDB File	Omega-N-methylated arginine
Glycosylation	56	-235		N-linked (GlcNAc...) (complex); partial; atypical
Glycosylation	73	-218		N-linked (GlcNAc...); atypical
Glycosylation	128	-163		N-linked (GlcNAc...)
Glycosylation	175	-116		N-linked (GlcNAc...)
Glycosylation	196	-95		N-linked (GlcNAc...)
Glycosylation	352	61		N-linked (GlcNAc...)
Glycosylation	361	70		N-linked (GlcNAc...)
Glycosylation	413	122		N-linked (GlcNAc...)
Glycosylation	444	153		N-linked (GlcNAc...)
Glycosylation	528	237		N-linked (GlcNAc...)
Glycosylation	568	277		N-linked (GlcNAc...); partial
Glycosylation	603	312		N-linked (GlcNAc...); partial
Disulfide bond	31<-->58	-260<-->-233	<-->
Disulfide bond	157<-->187	-134<-->-104	<-->
Disulfide bond	190<-->199	-101<-->-92	<-->
Disulfide bond	194<-->207	-97<-->-84	<-->
Disulfide bond	215<-->223	-76<-->-68	<-->
Disulfide bond	219<-->231	-72<-->-60	<-->
Disulfide bond	232<-->240	-59<-->-51	<-->
Disulfide bond	236<-->248	-55<-->-43	<-->
Disulfide bond	251<-->260	-40<-->-31	<-->
Disulfide bond	264<-->291	-27<-->0	<-->
Disulfide bond	295<-->307	4<-->16	<-->
Disulfide bond	311<-->326	20<-->35	<-->
Disulfide bond	329<-->333	38<-->42	<-->
Disulfide bond	337<-->362	46<-->71	<-->
Disulfide bond	470<-->499	179<-->208	<-->
Disulfide bond	506<-->515	215<-->224	<-->
Disulfide bond	510<-->523	219<-->232	<-->
Disulfide bond	526<-->535	235<-->244	<-->
Disulfide bond	539<-->555	248<-->264	<-->
Disulfide bond	558<-->571	267<-->280	<-->
Disulfide bond	562<-->579	271<-->288	<-->
Disulfide bond	582<-->591	291<-->300	<-->
Disulfide bond	595<-->617	304<-->326	<-->
Disulfide bond	620<-->628	329<-->337	<-->
Disulfide bond	624<-->636	333<-->345	<-->
Cross-link	716	425	Outside Of PDB File
Cross-link	737	446	Outside Of PDB File
Cross-link	754	463	Outside Of PDB File
Cross-link	867	576	Outside Of PDB File
Cross-link	929	638	Outside Of PDB File
Cross-link	970	679	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	745	454	Outside Of PDB File	ATP
Binding site	855	564	Outside Of PDB File	ATP

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