dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 3EKN
Chain: A
Site: 1234


	PTM	Style	Surface	Display
SNO: A_1234
Flank: A_1228~1240
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	1228	L	>10	C	8	-
	1229	D	9.156	C	135	-
	1230	Q	5.535	C	62
	1231	P	5.632	C	16
	1232	D	7.316	C	149	-
	1233	N	6.502	C	167	-
Center	1234	C	-	C	21	-
+6	1235	P	4.352	C	34	-
	1236	E	5.908	H	152	-
	1237	R	7.303	H	105	-
	1238	V	5.059	H	5
	1239	T	4.694	H	21
	1240	D	8.364	H	85	-
Other site of 10	1203	T	5.352	H	22
	1200	W	6.769	H	16	-
	1204	S	7.727	C	11	-
	1199	L	7.837	H	2	-
	1242	M	8.205	H	0
	1202	I	8.489	H	3	-
	1241	L	8.995	H	8	-
	1106	L	9.417	H	82
	1201	E	9.429	H	2	-
	1109	M	9.862	H	19

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
4.352	1235	P	C	34
4.694	1239	T	H	21
5.059	1238	V	H	5

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	400	-861	Outside Of PDB File	Phosphoserine
Modified residue	401	-860	Outside Of PDB File	Phosphotyrosine
Modified residue	407	-854	Outside Of PDB File	Phosphoserine
Modified residue	999	-262	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1185	-76		Phosphotyrosine; by autocatalysis
Modified residue	1189	-72		Phosphotyrosine; by autocatalysis
Modified residue	1190	-71		Phosphotyrosine; by autocatalysis
Modified residue	1355	94	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1361	100	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Glycosylation	43	-1218	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	52	-1209	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	138	-1123	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	242	-1019	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	282	-979	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	364	-897	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	424	-837	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	445	-816	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	541	-720	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	769	-492	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	920	-341	Outside Of PDB File	N-linked (GlcNAc...)
Disulfide bond	35<-->53	-1226<-->-1208	Outside Of PDB File
Disulfide bond	153<-->182	-1108<-->-1079	Outside Of PDB File
Disulfide bond	186<-->209	-1075<-->-1052	Outside Of PDB File
Disulfide bond	196<-->215	-1065<-->-1046	Outside Of PDB File
Disulfide bond	219<-->228	-1042<-->-1033	Outside Of PDB File
Disulfide bond	223<-->234	-1038<-->-1027	Outside Of PDB File
Disulfide bond	235<-->243	-1026<-->-1018	Outside Of PDB File
Disulfide bond	239<-->252	-1022<-->-1009	Outside Of PDB File
Disulfide bond	255<-->264	-1006<-->-997	Outside Of PDB File
Disulfide bond	268<-->280	-993<-->-981	Outside Of PDB File
Disulfide bond	286<-->311	-975<-->-950	Outside Of PDB File
Disulfide bond	293<-->301	-968<-->-960	Outside Of PDB File
Disulfide bond	315<-->328	-946<-->-933	Outside Of PDB File
Disulfide bond	331<-->335	-930<-->-926	Outside Of PDB File
Disulfide bond	339<-->360	-922<-->-901	Outside Of PDB File
Disulfide bond	462<-->495	-799<-->-766	Outside Of PDB File
Disulfide bond	551	-710	Outside Of PDB File
Disulfide bond	674<-->899	-587<-->-362	Outside Of PDB File
Disulfide bond	825<-->834	-436<-->-427	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	1033	-228		ATP
Binding site	1057	-204		ATP
Binding site	1177	-84		ATP

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