dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 3KMF
Chain: C
Site: 293


	PTM	Style	Surface	Display
SNO: C_293
Flank: C_287~299
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

Main
Special Amino Acid Count
Other site annotation(Features)

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	287	T	>10	H	108	-
	288	L	>10	H	68	-
	289	S	7.705	H	0
	290	E	6.138	H	97	-
	291	L	7.39	H	53	-
	292	H	6.527	H	33	-
Center	293	C	-	H	6	-
+6	294	D	4.354	H	70
	295	K	7.725	C	174	-
	296	L	8.347	C	76	-
	297	H	6.444	C	78	-
	298	V	8.137	C	18	-
	299	D	8.789	C	2	-
Other site of 6	345	Y	3.925	C	25
	346	H	4.712	C	123
	344	K	6.55	C	131	-
	342	A	8.249	C	21	-
	343	H	9.183	C	95	-
	300	P	9.276	C	0

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Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.925	345	Y	C	25
4.354	294	D	H	70
4.712	346	H	C	123

TOP 3

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	2	-92	Outside Of PDB File	N-pyruvate 2-iminyl-valine; in Hb A1b
Modified residue	60	-34	Outside Of PDB File	N6-acetyllysine
Modified residue	83	-11	Outside Of PDB File	N6-acetyllysine
Modified residue	94	0	Outside Of PDB File	S-nitrosocysteine
Modified residue	145	51	Outside Of PDB File	N6-acetyllysine; alternate
Glycosylation	2	-92	Outside Of PDB File	N-linked (Glc) (glycation); in Hb A1c
Glycosylation	9	-85	Outside Of PDB File	N-linked (Glc) (glycation)
Glycosylation	18	-76	Outside Of PDB File	N-linked (Glc) (glycation)
Glycosylation	67	-27	Outside Of PDB File	N-linked (Glc) (glycation)
Glycosylation	121	27	Outside Of PDB File	N-linked (Glc) (glycation)
Glycosylation	145	51	Outside Of PDB File	N-linked (Glc) (glycation); alternate

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Metal binding	64	-30	Outside Of PDB File	Iron (heme distal ligand)
Metal binding	93	-1	Outside Of PDB File	Iron (heme proximal ligand)

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	2	-92	Outside Of PDB File	2,3-bisphosphoglycerate; via amino nitrogen
Binding site	3	-91	Outside Of PDB File	2,3-bisphosphoglycerate
Binding site	83	-11	Outside Of PDB File	2,3-bisphosphoglycerate
Binding site	144	50	Outside Of PDB File	2,3-bisphosphoglycerate

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