dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 3W13
Chain: E
Site: 169


	PTM	Style	Surface	Display
SNO: E_169
Flank: E_163~175
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	163		>10			-
	164		>10			-
	165		>10			-
	166		>10			-
	167		>10			-
	168	N	4.973	C	189	-
Center	169	d	-	C	18	-
+6	170	P	6.169	C	57
	171	A	8.755	E	45	-
	172	T	>10	E	18	-
	173	V	>10	E	87	-
	174	I	>10	C	86	-
	175	N	>10	C	119	-
Other site of 16	188	C	3.427	E	54
	182	C	4.563	E	0
	159	C	5.079	C	47
	181	R	5.462	C	11	-
	189	Q	6.106	C	2	-
	187	H	6.189	E	55	-
	180	E	6.377	E	84
	186	S	7.759	C	67	-
	183	W	7.774	E	0	-
	185	H	7.983	C	107	-
	190	K	8.09	C	74	-
	184	T	8.311	E	0	-
	158	I	8.621	C	109	-
	130	T	9.016	C	15
	191	V	9.904	C	51
	131	I	9.967	C	4	-

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.427	188	C	E	54
4.563	182	C	E	0
4.973	168	N	C	189

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	400	-861	Outside Of PDB File	Phosphoserine
Modified residue	401	-860	Outside Of PDB File	Phosphotyrosine
Modified residue	407	-854	Outside Of PDB File	Phosphoserine
Modified residue	999	-262	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1185	-76		Phosphotyrosine; by autocatalysis
Modified residue	1189	-72		Phosphotyrosine; by autocatalysis
Modified residue	1190	-71		Phosphotyrosine; by autocatalysis
Modified residue	1355	94		Phosphotyrosine; by autocatalysis
Modified residue	1361	100		Phosphotyrosine; by autocatalysis
Glycosylation	43	-1218	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	52	-1209	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	138	-1123	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	242	-1019	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	282	-979	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	364	-897	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	424	-837	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	445	-816	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	541	-720	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	769	-492	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	920	-341	Outside Of PDB File	N-linked (GlcNAc...)
Disulfide bond	35<-->53	-1226<-->-1208	Outside Of PDB File
Disulfide bond	153<-->182	-1108<-->-1079	<-->
Disulfide bond	186<-->209	-1075<-->-1052	<-->
Disulfide bond	196<-->215	-1065<-->-1046	<-->
Disulfide bond	219<-->228	-1042<-->-1033	<-->
Disulfide bond	223<-->234	-1038<-->-1027	<-->
Disulfide bond	235<-->243	-1026<-->-1018	<-->
Disulfide bond	239<-->252	-1022<-->-1009	<-->
Disulfide bond	255<-->264	-1006<-->-997	<-->
Disulfide bond	268<-->280	-993<-->-981	<-->
Disulfide bond	286<-->311	-975<-->-950	<-->
Disulfide bond	293<-->301	-968<-->-960	<-->
Disulfide bond	315<-->328	-946<-->-933	<-->
Disulfide bond	331<-->335	-930<-->-926	<-->
Disulfide bond	339<-->360	-922<-->-901	Outside Of PDB File
Disulfide bond	462<-->495	-799<-->-766	Outside Of PDB File
Disulfide bond	551	-710	Outside Of PDB File
Disulfide bond	674<-->899	-587<-->-362	Outside Of PDB File
Disulfide bond	825<-->834	-436<-->-427	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	1033	-228	Outside Of PDB File	ATP
Binding site	1057	-204	Outside Of PDB File	ATP
Binding site	1177	-84		ATP

Menu:

Latest news: