dbSNO

Latest news:

Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

PDB ID: 4IBM
Chain: A
Site: 1245


	PTM	Style	Surface	Display
SNO: A_1245
Flank: A_1239~1251
Other chain
Other site
All protein
Other Function
Chain		B-factor
Charge		Ligand

	PDB site	Amino Acid	Distance(A)	Secondary Structure	Accessible surface area	Side Chian Angle
-6	1239	T	9.37	H	16	-
	1240	D	8.564	H	85	-
	1241	L	5.292	H	8	-
	1242	M	4.555	H	3	-
	1243	R	6.627	H	140	-
	1244	M	5.277	H	64	-
Center	1245	C	-	H	0	-
+6	1246	W	6.214	C	10
	1247	Q	8.633	C	57
	1248	F	>10	C	111	-
	1249	N	>10	C	83	-
	1250	P	>10	H	39	-
	1251	N	>10	H	42	-
Other site of 20	1196	G	3.677	H	0	-
	1192	M	5.108	H	1
	1195	F	5.153	H	0
	1193	W	5.388	H	3	-
	1194	S	7.085	H	7	-
	1254	P	7.191	C	7
	1253	R	7.277	C	1	-
	1197	V	7.436	H	0	-
	1199	L	7.713	H	2
	1259	I	8.015	H	0
	1256	F	8.555	H	2
	1198	V	8.574	H	0	-
	1191	D	8.646	H	0	-
	1255	T	8.693	C	52	-
	1189	S	9.158	H	24	-
	1238	V	9.253	H	4	-
	1190	S	9.389	H	2	-
	1117	A	9.393	H	0
	1200	W	9.558	H	14	-
	1113	A	9.844	H	2

Show

Neighbor Amino Acid Top 3
Distance(A)	PDB site	Amino Acid	Secondary Structure	Accessible surface area	Side Chian Angle	Single
3.677	1196	G	H	0	-
4.555	1242	M	H	3
5.108	1192	M	H	1

TOP 3

Amino acid modifications

Amino acid modifications image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Modified residue	400	-872	Outside Of PDB File	Phosphoserine
Modified residue	401	-871	Outside Of PDB File	Phosphotyrosine
Modified residue	407	-865	Outside Of PDB File	Phosphoserine
Modified residue	999	-273	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1185	-87		Phosphotyrosine; by autocatalysis
Modified residue	1189	-83		Phosphotyrosine; by autocatalysis
Modified residue	1190	-82		Phosphotyrosine; by autocatalysis
Modified residue	1355	83	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Modified residue	1361	89	Outside Of PDB File	Phosphotyrosine; by autocatalysis
Glycosylation	43	-1229	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	52	-1220	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	138	-1134	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	242	-1030	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	282	-990	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	364	-908	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	424	-848	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	445	-827	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	541	-731	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	769	-503	Outside Of PDB File	N-linked (GlcNAc...)
Glycosylation	920	-352	Outside Of PDB File	N-linked (GlcNAc...)
Disulfide bond	35<-->53	-1237<-->-1219	Outside Of PDB File
Disulfide bond	153<-->182	-1119<-->-1090	Outside Of PDB File
Disulfide bond	186<-->209	-1086<-->-1063	Outside Of PDB File
Disulfide bond	196<-->215	-1076<-->-1057	Outside Of PDB File
Disulfide bond	219<-->228	-1053<-->-1044	Outside Of PDB File
Disulfide bond	223<-->234	-1049<-->-1038	Outside Of PDB File
Disulfide bond	235<-->243	-1037<-->-1029	Outside Of PDB File
Disulfide bond	239<-->252	-1033<-->-1020	Outside Of PDB File
Disulfide bond	255<-->264	-1017<-->-1008	Outside Of PDB File
Disulfide bond	268<-->280	-1004<-->-992	Outside Of PDB File
Disulfide bond	286<-->311	-986<-->-961	Outside Of PDB File
Disulfide bond	293<-->301	-979<-->-971	Outside Of PDB File
Disulfide bond	315<-->328	-957<-->-944	Outside Of PDB File
Disulfide bond	331<-->335	-941<-->-937	Outside Of PDB File
Disulfide bond	339<-->360	-933<-->-912	Outside Of PDB File
Disulfide bond	462<-->495	-810<-->-777	Outside Of PDB File
Disulfide bond	551	-721	Outside Of PDB File
Disulfide bond	674<-->899	-598<-->-373	Outside Of PDB File
Disulfide bond	825<-->834	-447<-->-438	Outside Of PDB File

Binding site

Binding site image of Seq Distance (Amino Acid) of Cysteine:

Feature Key	Seq Position	Seq Distance (Amino Acid) of Cysteine	Space Distance(A)	Description
Binding site	1033	-239		ATP
Binding site	1057	-215		ATP
Binding site	1177	-95		ATP

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