logo
   Home | Network Analysis | Data Statistics | Quick Search by Swiss-Prot ID or Keyword

Menu:


Protein Name: DNA damage-binding protein 1

UniprotKB/SwissProt ID: DDB1_HUMAN (Q16531)

Gene Name: DDB1

Synonyms: XAP1

Organism: Homo sapiens (Human).

Function: Required for DNA repair. Binds to DDB2 to form the UV- damaged DNA-binding protein complex (the UV-DDB complex). The UV- DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as a component of numerous distinct DCX (DDB1-CUL4-X-box) E3 ubiquitin-protein ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the DCX E3 ubiquitin- protein ligase complex is determined by the variable substrate recognition component recruited by DDB1. DCX(DDB2) (also known as DDB1-CUL4-ROC1, CUL4-DDB-ROC1 and CUL4-DDB-RBX1) may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. DCX(DDB2) also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. DCX(DTL) plays a role in PCNA-dependent polyubiquitination of CDT1 and MDM2-dependent ubiquitination of TP53 in response to radiation-induced DNA damage and during DNA replication. DCX(ERCC8) (the CSA complex) plays a role in transcription-coupled repair (TCR). May also play a role in ubiquitination of CDKN1B/p27kip when associated with CUL4 and SKP2.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Cytoplasm. Nucleus. Note=Primarily cytoplasmic. Translocates to the nucleus following UV irradiation and subsequently accumulates at sites of DNA damage.

PDB :
( If your security settings prevent Jmol from running, please register http://140.138.144.145/ as a safe location in your Java settings. )

Graphical Visualization of Ubiquitination Sites:
Overview of Protein Ubiquitination Sites with Functional and Structural Information
InterPro ID Domain
IPR004871


The ubiquitination sites of DDB1_HUMAN

No. Position Ubiquitinated Peptide Secondary Structure Solvent Accessibility Substrate Motifs PubMed ID
170MELFRP K GESKDL EEEECC C CCCCCE 71.68%21906983
292ACILEY K QSGESI EEEEEE E CCCCCE 28.72%21906983
3141LYDGLF K VIPLDR ECCCEE E EEEECC 44.27%21890473
4153RDNKEL K AFNIRL CCCCCC C CCCCCC 52.61%21890473
5191PQGRHV K TYEVSL CCCEEE E EEEEEE 38.98%21890473
6204REKEFN K GPWKQE EEEEEC C CCCCCC 72.22%21890473
7287FMLLLE K EEQMDG EEEEEE E CCEECC 67.53%21906983
8298DGTVTL K DLRVEL CCCEEE E EEEEEE 45.40%21890473
9484LVSQEP K ALVSEW EEECCC C EEEECC 54.31%21890473
10491ALVSEW K EPQAKN EEEECC C CCCCCE 56.30%21906983
11570ISARIL K LPSFEL CEEEEE E ECCCHH 56.85%21890473
12579SFELLH K EMLGGE CCHHEE H HHHCCC 44.80%21890473
13823VSCKLG K DPNTYF EEEEEE E CCCEEE 79.17%21906983
14857FQYSDG K LQTVAE EEEECC E EEEEEE 42.27%21890473
15864LQTVAE K EVKGAV EEEEEE E ECCCCC 59.06%21906983
16897YEWTTE K ELRTEC EEECCC C EEEEEE 61.02%21906983
17917ALYLKT K GDFILV EEEEEE C CCEEEE 55.70%21890473
18936VLLLAY K PMEGNF EEEEEE E CCCCEE 32.08%21890473
191067VIKSVG K IEHSFW HCCCCC C CCHHHH 42.64%21890473
201081SFHTER K TEPATG EEECCC C CCCCCC 51.51%21906983
211121DDGSGM K REATAD CCCCCC C HHHHHH 51.08%20639865
221131TADDLI K VVEELT HHHHHH H HHHHHH 47.74%20639865

The interacting network mediated by proteins: DDB1_HUMAN

Metabolic pathway:
Kegg map ID Pathway
map03008Ribosome biogenesis in eukaryotes