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Protein Name: DNA damage-binding protein 2

UniprotKB/SwissProt ID: DDB2_HUMAN (Q92466)

Gene Name: DDB2

Organism: Homo sapiens (Human).

Function: Required for DNA repair. Binds to DDB1 to form the UV- damaged DNA-binding protein complex (the UV-DDB complex). The UV- DDB complex may recognize UV-induced DNA damage and recruit proteins of the nucleotide excision repair pathway (the NER pathway) to initiate DNA repair. The UV-DDB complex preferentially binds to cyclobutane pyrimidine dimers (CPD), 6-4 photoproducts (6-4 PP), apurinic sites and short mismatches. Also appears to function as the substrate recognition module for the DCX (DDB1- CUL4-X-box) E3 ubiquitin-protein ligase complex DDB1-CUL4-ROC1 (also known as CUL4-DDB-ROC1 and CUL4-DDB-RBX1). The DDB1-CUL4- ROC1 complex may ubiquitinate histone H2A, histone H3 and histone H4 at sites of UV-induced DNA damage. The ubiquitination of histones may facilitate their removal from the nucleosome and promote subsequent DNA repair. The DDB1-CUL4-ROC1 complex also ubiquitinates XPC, which may enhance DNA-binding by XPC and promote NER. Isoform D1 and isoform D2 inhibit UV-damaged DNA repair.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus. Note=Accumulates at sites of DNA damage following UV irradiation.

PDB :
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Graphical Visualization of Ubiquitination Sites:
Overview of Protein Ubiquitination Sites with Functional and Structural Information
InterPro ID Domain
IPR001680
IPR011046
IPR015943


The ubiquitination sites of DDB2_HUMAN

No. Position Ubiquitinated Peptide Secondary Structure Solvent Accessibility Substrate Motifs PubMed ID
1151DKPTFI K GIGAGG CCCEEE E ECCCCC 40.04%21890473
2163GSITGL K FNPLNT CCEEEE E ECCCCC 44.43%21906983
3187TRLQDF K GNILRV EEEEEC C CCEEEE 60.38%21890473
4278LRQVRG K ASFLYS CCCCCC C EEEEEE 30.23%21890473
5309LLTTDQ K SEIRVY EEEECC C CEEEEE 53.52%21906983
6362YPDPNF K SCTPYE CCCCEE E EEECCC 51.79%2189047

The interacting network mediated by proteins: DDB2_HUMAN


Disease:
Disease database Database Entry Disease information
HPRD02886Xeroderma pigmentosum, complementation group E, DDB-negative form
Metabolic pathway:
Kegg map ID Pathway
map03008Ribosome biogenesis in eukaryotes