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Protein Name: Probable ATP-dependent RNA helicase DDX58

UniprotKB/SwissProt ID: DDX58_HUMAN (O95786)

Gene Name: DDX58

Organism: Homo sapiens (Human).

Function: Innate immune receptor which acts as a cytoplasmic sensor of viral nucleic acids and plays a major role in sensing viral infection and in the activation of a cascade of antiviral responses including the induction of type I interferons and proinflammatory cytokines. Its ligands include: 5'- triphosphorylated ssRNA and dsRNA and short dsRNA (<1 kb in length). In addition to the 5'-triphosphate moiety, blunt-end base pairing at the 5'-end of the RNA is very essential. Overhangs at the non-triphosphorylated end of the dsRNA RNA have no major impact on its activity. A 3'overhang at the 5'triphosphate end decreases and any 5'overhang at the 5' triphosphate end abolishes its activity. Upon ligand binding it associates with mitochondria antiviral signaling protein (MAVS/IPS1) which activates the IKK- related kinases: TBK1 and IKBKE which phosphorylate interferon regulatory factors: IRF3 and IRF7 which in turn activate transcription of antiviral immunological genes, including interferons (IFNs); IFN-alpha and IFN-beta. Detects both positive and negative strand RNA viruses including members of the families Paramyxoviridae: Human respiratory syncytial virus and measles virus (MeV), Rhabdoviridae: vesicular stomatitis virus (VSV), Orthomyxoviridae: influenza A and B virus, Flaviviridae: Japanese encephalitis virus (JEV), hepatitis C virus (HCV), dengue virus (DENV) and west Nile virus (WNV). It also detects rotavirus and reovirus. Also involved in antiviral signaling in response to viruses containing a dsDNA genome such as Epstein-Barr virus (EBV). Detects dsRNA produced from non-self dsDNA by RNA polymerase III, such as Epstein-Barr virus-encoded RNAs (EBERs). May play important roles in granulocyte production and differentiation, bacterial phagocytosis and in the regulation of cell migration.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Cytoplasm. Cell projection, ruffle membrane. Cytoplasm, cytoskeleton. Cell junction, tight junction. Note=Colocalized with TRIM25 at cytoplasmic perinuclear bodies. Associated with the actin cytoskeleton at membrane ruffles.

PDB :
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Graphical Visualization of Ubiquitination Sites:
Overview of Protein Ubiquitination Sites with Functional and Structural Information
InterPro ID Domain
IPR001315
IPR001650
IPR003593
IPR011545
IPR014001
IPR014021


The ubiquitination sites of DDX58_HUMAN

No. Position Ubiquitinated Peptide Secondary Structure Solvent Accessibility Substrate Motifs PubMed ID
199DFKKIE K LEEYRL CCCCCC C CHHHHH 65.75%17392790
2154MMAGAE K LVECLL HHHHHH H HHHHHC 58.25%19484123
3164CLLRSD K ENWPKT HHCCCC C CCCHHH 54.94%19484123
4169DKENWP K TLKLAL CCCCCH H HHHHHH 59.09%17392790
5172NWPKTL K LALEKE CCHHHH H HHHHHH 36.62%17392790
6181LEKERN K FSELWI HHHHCC C CHHCCC 57.39%17392790
7190ELWIVE K GIKDVE HCCCCC C CCCCCC 55.85%17392790
8193IVEKGI K DVETED CCCCCC C CCCCCC 65.47%17392790
9644ALVDAL K NWIEGN HHHHHH H HHHHHC 52.54%2190698

The interacting network mediated by proteins: DDX58_HUMAN


Disease:
Disease database Database Entry Disease information
OMIM609631DEAD BOX POLYPEPTIDE 58; DDX58 ;;DEAD/H BOX 58;; RETINOIC ACID-INDUCIBLE GENE I; RIGI
Metabolic pathway:
Kegg map ID Pathway
map03008Ribosome biogenesis in eukaryotes