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Protein Name: Transcription intermediary factor 1-beta

UniprotKB/SwissProt ID: TIF1B_HUMAN (Q13263)

Gene Name: TRIM28

Synonyms: KAP1, RNF96, TIF1B

Organism: Homo sapiens (Human).

Function: Nuclear corepressor for KRAB domain-containing zinc finger proteins (KRAB-ZFPs). Mediates gene silencing by recruiting CHD3, a subunit of the nucleosome remodeling and deacetylation (NuRD) complex, and SETDB1 (which specifically methylates histone H3 at 'Lys-9' (H3K9me)) to the promoter regions of KRAB target genes. Enhances transcriptional repression by coordinating the increase in H3K9me, the decrease in histone H3 'Lys-9 and 'Lys-14' acetylation (H3K9ac and H3K14ac, respectively) and the disposition of HP1 proteins to silence gene expression. Recruitment of SETDB1 induces heterochromatinization. May play a role as a coactivator for CEBPB and NR3C1 in the transcriptional activation of ORM1. Also corepressor for ERBB4. Inhibits E2F1 activity by stimulating E2F1-HDAC1 complex formation and inhibiting E2F1 acetylation. May serve as a partial backup to prevent E2F1-mediated apoptosis in the absence of RB1. Important regulator of CDKN1A/p21(CIP1). Has E3 SUMO-protein ligase activity toward itself via its PHD-type zinc finger. Also specifically sumoylates IRF7, thereby inhibiting its transactivation activity. Ubiquitinates p53/TP53 leading to its proteosomal degradation; the function is enhanced by MAGEC2 and MAGEA2, and possibly MAGEA3 and MAGEA6. Mediates the nuclear localization of KOX1, ZNF268 and ZNF300 transcription factors.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus. Note=Associated with centromeric heterochromatin during cell differentiation through CBX1 (By similarity).

PDB :
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Graphical Visualization of Ubiquitination Sites:
Overview of Protein Ubiquitination Sites with Functional and Structural Information
InterPro ID Domain
IPR000315
IPR001487
IPR001841
IPR001965
IPR003649
IPR011011
IPR013083


The ubiquitination sites of TIF1B_HUMAN

No. Position Ubiquitinated Peptide Secondary Structure Solvent Accessibility Substrate Motifs PubMed ID
1127KQQCFS K DIVENY CCCCCC C CCCHHH 31.08%21890473
2213VYCNVH K HEPLVL CCCCCC C CCHHEE 45.43%21906983
3238CQLNAH K DHQYQF HCCCCC C CCCCEE 55.27%21906983
4254AVRNQR K LLASLV HHHHHH H HHHHHH 37.78%21890473
5261LLASLV K RLGDKH HHHHHH H HHHHHH 47.39%21890473
6266VKRLGD K HATLQK HHHHHH H HHHHHH 33.08%21906983
7272KHATLQ K STKEVR HHHHHH H HHHHHH 64.30%21890473
8275TLQKST K EVRSSI HHHHHH H HHHHHH 62.39%21906983
9289QVSDVQ K RVQVDV HHHHHH H HHHHHH 55.15%21906983
10296RVQVDV K MAILQI HHHHHH H HHHHHH 20.39%21906983
11304AILQIM K ELNKRG HHHHHH H HHHHHH 61.76%21890473
12319LVNDAQ K VTEGQQ HHHHHH H HHHHHH 53.50%21890473
13337QHWTMT K IQKHQE HHHHHH H HHHHHH 32.11%21890473
14340TMTKIQ K HQEHIL HHHHHH H HHHHHH 51.21%21890473
15365TALLLS K KLIYFQ HHHHHH H HHHHHH 52.12%21906983
16366ALLLSK K LIYFQL HHHHHH H HHHHHH 36.42%21890473
17377QLHRAL K MIVDPV HHHHHH H HCCCCC 26.12%21890473
18390EPHGEM K FQWDLN CCCCCC C EEECCC 30.06%21906983
19400DLNAWT K SAEAFG CCCCHH H HHHHHH 36.65%21890473
20407SAEAFG K IVAERP HHHHHH H HHHCCC 27.79%21890473
21434APGPLS K QGSGSS CCCCCC C CCCCCC 67.38%21890473
22469PHVSGV K RSRSGE CCCEEE C CCCCCC 48.45%21890473
23507SQPPVF K VFPGST CCCCCE E EECCCC 43.11%21906983
24575TEGPET K PVLMAL CCCCCC C CEEEEC 31.31%21906983
25750RARLQE K LSPPYS HHHHHC C CCCCCC 41.10%21890473
26770DVGRMF K QFNKLT HHHHHH H HHHHHC 44.64%21890473
27774MFKQFN K LTEDKA HHHHHH H HCCCCH 59.06%21890473
28779NKLTED K ADVQSI HHHCCC C HHHHHH 40.01%21890473

The interacting network mediated by proteins: TIF1B_HUMAN

Metabolic pathway:
Kegg map ID Pathway
map03008Ribosome biogenesis in eukaryotes