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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.
Calculate RMSD and Structure align of same sequence by TM-align
| SNC Protein | Resolution [Å] | Same SEQ Protein | Resolution [Å] | Length | RMSD | TM-score | 9Å of RMSD | Show | ||
| 1BUW | B | 1.9 | 1DXT | B | 1.7 | 141 | 0.96 | 0.95631 | 1.07 | View |
| 2HXK | A | 1.65 | 2IFQ | B | 1.2 | 104 | 0.44 | 0.96855 | 0.26 | View |
| 2Y33 | A | 2 | 4BQW | A | 1.79 | 216 | 0.32 | 0.99199 | 0.14 | View |
| 3V4N | A | 1.6 | 3V4X | A | 1.95 | 387 | 0.64 | 0.99194 | 0.18 | View |
| 2LLT | A | NMR | 2LLU | A | NMR | 93 | 1.78 | 0.82482 | 1.18 | View |
*An algorithm for protein structure alignment and comparison;Based on statistics:
0.0 < TM-score < 0.30, random structural similarity
0.5 < TM-score < 1.00, in about the same fold
Reference:
Y. Zhang, J. Skolnick, TM-align: A protein structure alignment algorithm based on TM-score, Nucleic Acids Research, 2005 33: 2302-2309.
*RMSD: Root-mean-square deviation.