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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

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Protein Name: DNA-dependent protein kinase catalytic subunit

UniprotKB/SwissProt ID: PRKDC_HUMAN (P78527)

Gene Name: PRKDC

Synonyms: HYRC, HYRC1

Organism: Homo sapiens (Human).

Function: Serine/threonine-protein kinase that acts as a molecular sensor for DNA damage. Involved in DNA nonhomologous end joining (NHEJ) required for double-strand break (DSB) repair and V(D)J recombination. Must be bound to DNA to express its catalytic properties. Promotes processing of hairpin DNA structures in V(D)J recombination by activation of the hairpin endonuclease artemis (DCLRE1C). The assembly of the DNA-PK complex at DNA ends is also required for the NHEJ ligation step. Required to protect and align broken ends of DNA. May also act as a scaffold protein to aid the localization of DNA repair proteins to the site of damage. Found at the ends of chromosomes, suggesting a further role in the maintenance of telomeric stability and the prevention of chromosomal end fusion. Also involved in modulation of transcription. Recognizes the substrate consensus sequence [ST]-Q. Phosphorylates 'Ser-139' of histone variant H2AX/H2AFX, thereby regulating DNA damage response mechanism. Phosphorylates DCLRE1C, c-Abl/ABL1, histone H1, HSPCA, c-jun/JUN, p53/TP53, PARP1, POU2F1, DHX9, SRF, XRCC1, XRCC1, XRCC4, XRCC5, XRCC6, WRN, MYC and RFA2. Can phosphorylate C1D not only in the presence of linear DNA but also in the presence of supercoiled DNA. Ability to phosphorylate p53/TP53 in the presence of supercoiled DNA is dependent on C1D.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Nucleus. Nucleus, nucleolus.

Network with metabolic pathway:
Kegg map ID Pathway Link
map03450Non-homologous end-joining
map04110Cell cycle
Graphical Visualization of S-nitrosylation Sites:
Overview of Protein S-nitrosylation Sites with Functional and Structural Information
InterPro ID Domain
IPR000357
IPR000403
IPR003151
IPR003152
IPR011009
IPR012582
IPR013026
IPR014009

The S-nitrosylation sites of PRKDC_HUMAN

No. Position S-nitrosylated Peptide Secondary Structure of S-nitrosylated Peptide Solvent Accessibility of nitrosylated Site Substrate Motifs PubMed ID Experiment
125LQETLSAADR C GAALAGHQLI HHHHHHHHHC C CHHHHHHHHH 4.47%HC0219483679in vivo
2478LAAKGPVLRN C ISTVVHQGLI HCCCCCHHHH H HHHHHHHHHH 1.78%HC0319483679in vivo
3795MQPYYKDILP C LDGYLKTSAL HCHHHHHHHH H HHHHHHHCCC 4.92%HC1219483679in vivo
41499KGIAPGDERQ C LPSLDLSCKQ HHCCCCCHHH H CCCCCCCHHH 8.27%HC0919483679in vivo
51507RQCLPSLDLS C KQLASGLLEL HHHCCCCCCC H HHHHHHHHHH 4.18%HC1219483679in vivo
62342ERKNILEESL C ELVAKQLKQH HHHHHHHHHH H HHHHHHHHHH 5.45%HC0719483679in vivo
73187NIWDDIITNR C FFLSKIEEKL HHHHHHHHHH H HHHHHHHHHH 2.83%HC0219483679in vivo
83293LSHCRSRSQG C SEQVLTVLKT HHHHHCCCCC C HHHHHHHHHH 2.91%HC072212679in vitro
93347IANALSSEPA C LAEIEEDKAR HHHHHCCCCC H HHHHCCCCCH 5.60%HC1219483679in vivo
104045EKNWYPRQKI C YAKRKLAGAN CCCCCHHHHH H HHHHHHHCCC 3.30%HC0319483679in vivo