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Sep. 10, 2014:
A total of 174 experimentally verified S-nitrosylation sites on 94 S-nitrosylated proteins from individualized human colorectal cancer tissues using a label-free quantitation strategy.

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Protein Name: Ubiquitin-60S ribosomal protein L40

UniprotKB/SwissProt ID: RL40_HUMAN (P62987)

Gene Name: UBA52

Synonyms: UBCEP2

Organism: Homo sapiens (Human).

Function: Ubiquitin: exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-6-linked may be involved in DNA repair; Lys-11-linked is involved in ERAD (endoplasmic reticulum-associated degradation) and in cell-cycle regulation; Lys-29-linked is involved in lysosomal degradation; Lys-33-linked is involved in kinase modification; Lys-48-linked is involved in protein degradation via the proteasome; Lys-63-linked is involved in endocytosis, DNA-damage responses as well as in signaling processes leading to activation of the transcription factor NF-kappa-B. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling. 60S ribosomal protein L40: component of the 60S subunit of the ribosome. Ribosomal protein L40 is essential for translation of a subset of cellular transcripts, and especially for cap-dependent translation of vesicular stomatitis virus mRNAs.

Other Modifications: View all modification sites in dbPTM

Protein Subcellular Localization: Ubiquitin: Cytoplasm (By similarity). Nucleus (By similarity). 60S ribosomal protein L40: Cytoplasm (By similarity).

Network with metabolic pathway:
Kegg map ID Pathway Link
map03010Ribosome
Graphical Visualization of S-nitrosylation Sites:
Overview of Protein S-nitrosylation Sites with Functional and Structural Information
InterPro ID Domain
IPR001975

3D Structure Databases:
3D structure databases
EntryMethodResolution (A)ChainPositionsView
2LJ5 NMR - A1-76Link
2MBH NMR - A1-76Link
2RSU NMR - A1-76Link
3J3B EM 5.00 A m77-128Link
4HJK X-ray 1.78 A A1-76Link
4JIO X-ray 3.60 A U1-76Link

The S-nitrosylation sites of RL40_HUMAN

No. Position S-nitrosylated Peptide Secondary Structure of S-nitrosylated Peptide Solvent Accessibility of nitrosylated Site Substrate Motifs PubMed ID Experiment
191SLRQLAQKYN C DKMICRKCYA   4.89%HC0419483679in vivo
2115PRAVNCRKKK C GHTNNLRPKK   7.11%HC022212679in vitro